species:   Rhirr
pid:       PID1180
parent:    Locus_345
paralog:   
locus:     scaffold_28:353658-353769
matures:   ['AAUUAAAGUGUGGCUGUCUUGGUG', 'CUAAGAUAGCUGCACUUUAAUUAG']
srr:       ERR2841788
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhirr.Rhiir2_1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Silvestri2019-js.ERR2841788.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Silvestri2019-js.ERR2841788.cram scaffold_28:353658-353769

0 out of bounds
10 alignments
8 proper strand
6 stranded perfect matches

       **************************                                                   **************************  
UCGACGAGUAAUUAAAGUGUGGCUGUCUUGGUGGUCCGGGUGAUGUACUGUAAGUAACCAGAUCUUGGUUCAGUUACACAUUGAUACUAAGAUAGCUGCACUUUAAUUAGCA
........(((((((((((((((((((((((((.((..((((.(((((((.....(((((.....)))))))).)))))))))))))))))))))))))))))))))))...
---------AAUUAAAGUGUGGCUGUCUUGGUG------------------------------------------------------------------------------- l=24 a=1 c
--------------------------------------------------------------------------------------CUAAGAUAGCUGCACUUUAAUUAG-- l=24 a=0 c*
---------AAUUAAAGUGUGGCUGUCUUGGUG------------------------------------------------------------------------------- l=24 a=1 ma
--------------------------------------------------------------------------------------CUAAGAUAGCUGCACUUUAAUUAG-- l=24 a=0 ma*

---------------------------------------------------------CCAGAUCUUGG-------------------------------------------- l=11 a=1 
-----------------------------------CCGGGUGcUGUACU--------------------------------------------------------------- l=14 a=1 
---------AcUUAAAGUGUGGCUGU-------------------------------------------------------------------------------------- l=17 a=1 
---------AAUUAAAGUGUGGCUGUCU------------------------------------------------------------------------------------ l=19 a=1 
---------AAUUAAAGUGUGGCUGUCUU----------------------------------------------------------------------------------- l=20 a=1 
---------AAUUAAAGUGUGGCUGUCUUGGUG------------------------------------------------------------------------------- l=24 a=1 (c,ma)
---------AAUUAAAGUGUGGCUGUCUUGGUGG------------------------------------------------------------------------------ l=25 a=1 
---------AAUUAAAGUGUGGCUGUCUUGGUGGUCCGG------------------------------------------------------------------------- l=30 a=1 

mb-01011
ax-1011011
ku-01
ss-100110111100
fn-101
